Special

FBgn0037698 @ dm6

Biotype
protein_coding
Gene Symbol
CG16779
Description
This gene is referred to in FlyBase by the symbol DmelCG16779 (FBgn0037698). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (4 unique). Gene sequence location is 3R:9461084..9493677. Its molecular function is described by: transcription regulatory region sequence-specific DNA binding; transcription factor binding; DNA-binding transcription factor activity. The biological processes in which it is involved are not known. 10 alleles are reported. The phenotype of these alleles manifest in: wing. The phenotypic classes of alleles include: visible; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chr3R:9461084-9493677:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
34
chr3R:9493523-9493556
-
15.02
88.93
0
Alternative 5'ss
161
chr3R:9493396-9493556
-
65.98
84.76
0
Alternative 5'ss
0
NA
-
17.18
43.75
0
Alternative 5'ss
11
chr3R:9467980-9467990
-
81.83
43.75
0
Exon Skipping
153
chr3R:9478545-9478697
-
42.75
97.24
0
Exon Skipping
425
chr3R:9467980-9468404
-
84.85
85.39
0
Exon Skipping
87
chr3R:9467354-9467440
-
34.84
85.39
0
Intron Retention
6192
chr3R:9487204-9493395
-
30.98
48.43
0
Intron Retention
224
chr3R:9468405-9468628
-
11.72
32.28
0
Intron Retention
1348
chr3R:9466632-9467979
-
37.82
79.29
0
Intron Retention
152
chr3R:9475382-9475533
-
6.35
100
0
Intron Retention
121
chr3R:9473165-9473285
-
6.9
89.66
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000169740 ZNF32 1-to-2
Human hg38 ENSG00000172006 ZNF554 1-to-2
Human hg19 ENSG00000169740 ZNF32 1-to-2
Human hg19 ENSG00000172006 ZNF554 1-to-2
Mouse mm10 ENSMUSG00000059689 Zfp637 1-to-2
Mouse mm10 ENSMUSG00000095206 Gm17404 1-to-2
Mouse mm9 ENSMUSG00000059689 Zfp637 1-to-2
Rat rn6 ENSRNOG00000010653 Elmsan1 1-to-3
Rat rn6 ENSRNOG00000021800 Zfp541 1-to-3
Rat rn6 ENSRNOG00000022598 Trerf1 1-to-3
Cow bosTau6 ENSBTAG00000016191 ZNF32 1-to-2
Cow bosTau6 ENSBTAG00000031352 ZNF554 1-to-2
Zebrafish danRer10 ENSDARG00000087483 si:dkey-226l10.6 1-to-9
Zebrafish danRer10 ENSDARG00000091393 CR788316.2 1-to-9
Zebrafish danRer10 ENSDARG00000092329 si:dkey-156j15.1 1-to-9
Zebrafish danRer10 ENSDARG00000102139 CABZ01081748.2 1-to-9
Zebrafish danRer10 ENSDARG00000103375 si:ch211-161m3.4 1-to-9