DmeEX0001152 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG16779 (FBgn0037698). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (4 unique). Gene sequence location is 3R:9461084..9493677. Its molecular function is described by: transcription regulatory region sequence-specific DNA binding; transcription factor binding; DNA-binding transcription factor activity. The biological processes in which it is involved are not known. 10 alleles are reported. The phenotype of these alleles manifest in: wing. The phenotypic classes of alleles include: visible; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.

Coordinates

chr3R:9463410-9468787:-

Coord C1 exon

chr3R:9468629-9468787

Coord A exon

chr3R:9467980-9468404

Coord C2 exon

chr3R:9463410-9466631

Length

425 bp

Sequences

Splice sites

3' ss Seq

CCCGCCTGCGCCGAATGTAGAGC

3' ss Score

4.96

5' ss Seq

CAAGTAAGA

5' ss Score

7.61

Exon sequences

Seq C1 exon

CTGCAAACGAAGTCCTCCGGCGAATGTGTGCAAATGTACTACTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTGACGCACTTGAAGATGGAGCCCGTGGTGGTCATTGCTCCCGCGGTGGAGAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCG

Seq A exon

AGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTATGGTCGCAGTGCCAGCAGCAACACCACCAACAACAACAGCAGCAGCAGCAACACTGGCAGCAGCAGCAACGTGCAGCATGCCGCAGCAAGCAGTGCCAGTTCCGGTGGCAACAACAACAACAGCAGCAGCTACGCATGCGCAACACTAAGTGGCAGCAACGGCAGCAGCAATAATGCGAGTACCAATGTCGCTGGAGCAGTAGCAACACACAGCAGCAACATGGCTCAAAACGGCAGCAACTGCAGTGGCCATGCGAATGCAGCAATAGCAACATCTGCGCTTTCGACCACGCCCAAATTGGAGGCGGGCATGGGCAATACCACTAACATACCGATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAA

Seq C2 exon

GGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCACATGAAGACGCACCGCGTCCAGGAGCCGGATCAGAAACACCAACTGCAAAACCAGGCTGGAGCTGGACTGACCACCGTCGCCACATCAACAATAACCGCACCATCGTAGACACCGACGAGGAATTCCGTGGGGGAATGAACGATATGGACAGGGAAACCATGAGGCGTATATAGCAAACAAACAAAAATCGATTGACAATCGCATTAAGCAAGCGGCAAGCATTGTTTACCACTGTTAGAATTTATGCTTAGACGAATTTGGGTCTAAAAATCAATGTCACGTGTACGTAGTAGTTAAAGGCATTTCTTCACTAGGTCTATCTAAATCTATAGCTCAAGCCCCTTTCTTCTTCAATCACTTCTCTATCTATCCCTTAAGTAGAAAACACTGCGACTCGCTGTAGGTTATAAGTCAAGCCAAGGATTGGTACAAGTTCAAATTGAATTGTTATTGACTATTGTAGGCA

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0037698_MULTIEX1-1/3=C1-C2

Average complexity

C1*

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features