HsaEX6072101 @ hg19
Exon Skipping
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74185610-74188212:-
Coord C1 exon
chr14:74188000-74188212
Coord A exon
chr14:74186008-74186204
Coord C2 exon
chr14:74185610-74185711
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTGATTTTCTTCAGGCC
3' ss Score
9.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTTCCCAAAAGTTCCCAAGGGTGCCTCTTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCCAAGAGGGAGGTGAAGGAGCCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGAGATCCAAGAGAAGGAGGAGCAGGAAGAGGGGCGAGAGCGCAGCAGGCGGGCAGCGGCAGTCAAAGCCACGCAGACACTACAGGCCAATGAGTCG
Seq A exon
GCCAGTGACATCCTCATCCTCCGGAGCCACGAGTCCAACGCCCCTGGGTCTGCCGGTGGCCAGGCCTCGGAGAAGCCAAGGGAAGGGACAGGGAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACATTCAGTAAGACCCAGAATCAGGAGAACACTTTCCCCTGTAAAAAATGTGGCAG
Seq C2 exon
GGTGTTTTACAAGGTGAAGAGCCGCAGTGCGCATATGAAGAGCCACGCAGAGCAGGAGAAGAAGGCTGCAGCGCTGAGGCTGAAGGAGAAAGAGGCCGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-'21-24,'21-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.986 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTTCCCAAGGGTGCCT
R:
TGGCTCTTCATATGCGCACTG
Band lengths:
252-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)