MmuEX6082041 @ mm10
Exon Skipping
Gene
ENSMUSG00000042507 | Elmsan1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685106]
Coordinates
chr12:84149176-84155107:-
Coord C1 exon
chr12:84154895-84155107
Coord A exon
chr12:84152835-84153031
Coord C2 exon
chr12:84149176-84152561
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTGCTTGTCTCCAGGCC
3' ss Score
9.68
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCTAAGAGAGAAGTGACAGAACCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGACACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGAGCGCTGCCGGCGGGCCGCTGCCGTCAAAGCTACACAGACACTACAGGCCAATGAGGCG
Seq A exon
GCCAATGACGTTCTCATTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGAGGGGCCGGGGAAGTCCCGAAGGGCACTGCCTTTCACAGAGAAGAAGAAAAAAGCCGAGGCATTTAATAAAACCCAGAACCAGGAGAACACCTTCCCTTGTAAAAAGTGCGGCAG
Seq C2 exon
GGTGTTTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAAGAGAAGAAGGCCGCAGCTCTGAGGCTGAAGGAGAAGGAGGCTGCAGCGGCCGCCGCACATCAGCAGGCGCTGAGAGAAGAGAGCGGCGAAGGGGAGAAGGGCTGAGGACCCTGCTGGATCCTATTGCCGGGCTCCCCAGCACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTTGCTCTGCAGAACAAACCCGATAATGAAAAATAAACCGGCTCTTTTATTTACAAAGGCCAAGGACAGTGTTAAGGGCTGCAGGATCCAGTTCTCTCAGTATCTGGTTGGTCCCGAGTTCTGCTTTCCCGGAGCCTAGAGAGGCCGGGCCACTTGGAATGGGCTAGAGCTCTACAGCTGCTTCTCTGATCTCTGCTGTTGCATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042507-'30-29,'30-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.864 C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAGAGTCCCCAAGT
R:
CGGCCTTCTTCTCTTGCTCTG
Band lengths:
251-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types