DreEX6045150 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25987401-25989056:-
Coord C1 exon
chr20:25988943-25989056
Coord A exon
chr20:25988574-25988791
Coord C2 exon
chr20:25987401-25987924
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTCCTTACTATTTTGTCCAGGAG
3' ss Score
5.23
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGAACGCAAGACAAGCAGATAAAGAAAATGACTGTAAACAACAGGAGGAAATGGAAGACAGTGTGGATGAAAGGCTACAAGATGTGACCAAGACACTTCAGCAAAGTGACAAT
Seq A exon
GAGAGGGCAGACATGGCTCAGGAGGACCAGAAGAAAAGCTCTGTGGCAGCAGAAGAGTCTTCTGGTCTGATGGTAGTGGTTCAACCCACCTTTAAAACCCCTTCACCAGCACCTCCAAAGCCCCGCTCTTACAACATCGGCAGGAAAACCAAGCCCTCAACCGTCAGCAAACCTCAGGGAGAGCCAGAGGGGATTTTTCCTTGCAAGAAGTGTAGCAG
Seq C2 exon
GGTGTTCTATAAAGTGAAGAGCCGCAGTGCCCACATGAAGAGTCACGCAGAGCAGGAGAAGAAAGCAGCAGCTCAGCGCCAAAGAGAGGAAGAGGAGCAGGCAGCTAAAGCCAGACACGAAATGATACTAGTGGCGAGGAGGAAAGAAGCACAAGGCAGAGGTCAAGAGGAGAGCAGTGAAGCTGAGGAGAGCTCAGCAGAGCCGGACGACGATCGGGATGTAGACTGGCAATGAGGAACAGGTGACTCCTTTAGTCTTCTTTTGTACCAGTTGGTACCAAAAAATTGTGACTTGTGCATCTCAATTGAGGGCAGTTGACATGTTTGAAACAATCTAAAATACCTTAGCCTTCTCATTTTTACCAAAATTTTATAAGAACTTGGTATATCCTTTGGTATATATATATTTTAAAAGTGCAAATATTATGACAATTTAGCATCATTCATGATGAATGACGTTGAAACATGAAACGTTCAGCTTATTGTTGAGCTATTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'14-18,'14-15,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.869 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTGTGGATGAAAGGCT
R:
CACCTGTTCCTCATTGCCAGT
Band lengths:
303-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]