BtaEX6054967 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85517890-85520558:-
Coord C1 exon
chr10:85520346-85520558
Coord A exon
chr10:85518637-85518833
Coord C2 exon
chr10:85517890-85518178
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTGACTCTCTCCAGGCC
3' ss Score
10.26
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTTCCCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAATGAAGAGAGGCTAGAGCCCAAGAAGGAAGAAAAAGAGACCAGAAAGGAGGGGGAGGAGGAGATGCCAGAGACCCAGGACAAGGGGGAGCAGGAAGAGGGGCGAGAGCGAAGCCGGCGGGCAGCGGCTGTCAAAGCCACACAGACACTACAGGCCAATGAGTCG
Seq A exon
GCCAATGACATCCTCATCCTCCGAAGCCACGAGTCCAACGCCCCTGGATCTGCGGGTGGCCAGGCCTCAGAGAAGCCAAGGGAGGGGCCAGGAAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACTTTTAATAAGACCCAGAATCAGGAGAACACTTTCCCTTGTAAAAAATGCGGCAG
Seq C2 exon
GGTGTTTTTCAAGGTGAAGAGTCGCAGCGCCCACATGAAGAGCCACGCGGAGCAGGAGAAGAAGGCAGCTGCCCTGAGGCAGAAGGAGAAAGAGGCCGCGGCCGCTGCAGCCACTGCGGCCGCCTCCCCGCACCAGCCGGCCCTGCGGGAGGAGAGCGGTGCGGGCGAGAGAGGCTGAGGCCTGGAGCTCCGGAGCCTGCGGAGGGAGAGATCGCGCGGACTTGTCTCTGCAAAACGAATACAATTCAATAAACGGCCCTTTTTATTTATAAAGGTCCCAGGAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'20-12,'20-11,21-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.985 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCCAGAAGAGAGTCCC
R:
AGCTGCCTTCTTCTCCTGCTC
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]