RnoEX6029321 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107633716-107639262:-
Coord C1 exon
chr6:107639050-107639262
Coord A exon
chr6:107637447-107637643
Coord C2 exon
chr6:107633716-107637151
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTCACTTGTCTCCAGGCC
3' ss Score
8.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGAGGTACCAGACACCCAGGAAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCG
Seq A exon
GCCAATGATGTCCTCATTCTCCGGAGCCACGAACCCAATGCCCCGGGGTCTGCCAGTGTTCAGACCTCAGAGAAGCCAAGGGAAGGGCCGGGGAAGTCACGAAGGGCTCTGCCTTTCACAGAGAAGAAGAAAAAACCGGAGGCATTTAATAAAACCCAAAACCAGGAGAACACTTTCCCTTGTAAAAAGTGTGGCAG
Seq C2 exon
GGTGTTTTATAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAGGAGAAGAAGGCTGCAGCTCTAAGACTGAAGGAGAAGGAGGCTGCAGCCGCCGCCGCGCACCAGCAGGCGCTGAAAGAAGAGAGCGGCGAAGGCGAGAAGGGCTGAGGCCCTGCTGGATCCTCTTGCCGGGCTCCCCAGAACTCTGTACCTGGAACCTCTAGAGAAGGCCAGGAGAGGATCACTTGGACTTTGCTTTGCAAAACAAATCAAATAATGAAAAATAAACAGGCTCTTTTATTTACGAAGGCCAAGGACAGTGTTAAGGGCTGCAGGATCCAGTTCTCTCAGTATCTGGTTTGTCCCGAGTCGTTCTGCTTTCCTGGAGCCTTGAGAGGCCAGGCCCCTTGGAATGGGAAAGAGCTCTGAGCTACTTCTCTGATCTCTGCTGTCGCATCTGTGCCTCTTGTATCCCAGGTCCTTAGGAAGCCACCACGGCAAGCCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'21-20,'21-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.894 C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGAGGCTGGAACCCAA
R:
TCAGTCTTAGAGCTGCAGCCT
Band lengths:
246-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]