GgaEX1022253 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25432350-25435302:+
Coord C1 exon
chr5:25432350-25432523
Coord A exon
chr5:25432817-25433016
Coord C2 exon
chr5:25434007-25435302
Length
200 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTTCTTTCTCCAAAGGCC
3' ss Score
10.59
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGTTCCCATAGGTTTGCACGTGTGCTTCCTCTCAGAAGGGACTTTTTCAGTGAAGAACAGGGGCACTTGGAAGAGGAAGAAGAGGAGGCAGAAGAGGCAGAGGAAGGGTTGGATAACAGAAAGAAGAGCACACTCCTTTTCAAAGATGAACAGACACTACAAGATGATTTAATA
Seq A exon
GCCAGTGATGCCAATATAAGGAGTCGAGAGGCAACTGTTACCGGCAGAATTGGAAGAAGGCCGAGGGAGACGACCATGAAGCCTCGAAAGCTTATTCCTGCTCCAGTGCAGAGGAGGCGGCGAAAACAGAAGATGAAATCAGATGTTACCAGTAAAATCCAGAACACAGAAAACACATTTCCATGTAAAAAGTGTGGCAG
Seq C2 exon
GGTGTTCTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGCCATGCAGAGCAGGAGAAGAAGGCAGCCGCACTGAAGCAGCAAGAGAGAGAGGCAGCAGCAGCAGCAGAGGCGGCAGCAGCGGCAGCCCACAGCCAGGCCCAGCAGGAAGAGAGCAGTGAGAGTGGGAGCAACAGCAGTGGAAGCAGCAGTGGGAGCTCGGATGAGGATGGAGAAATATAGCAGCAGACTAGAAATGGAGGGAGTAGCAAGGCTGGACCTATCACCCTCTCAGTGGTTTCACATTTTTTGCTTGCACTTTTCTGGCCTGAACCATCAGGTCTCAGTTTCAGTGCTGCGGCCTCCTCGTGCCACATGTTCCACTTCACCTTGCCAGTACTGACTGAGCCAGAGTGGCGGACAAGAAGATTTGTTTCAGCTTGGATTTAAAAACAAAAAACAAAAACAAATAAGATTTCTATTCTATTTATAGTCATACCTGAGGTACACAATTGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282_MULTIEX2-3/6=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.776 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
PF138241=zf-Mss51=PU(40.0=32.8)
C2:
PF138241=zf-Mss51=PD(58.2=42.7)
Main Skipping Isoform:
ENSGALT00000015102fB1562
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAGGCAGAGGAAGGGT
R:
TCTCCATCCTCATCCGAGCTC
Band lengths:
302-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]