MmuEX6082041 @ mm9

Exon Skipping

Gene

ENSMUSG00000042507 | C130039O16Rik

Description

RIKEN cDNA C130039O16 gene [Source:MGI Symbol;Acc:MGI:2685106]

Coordinates

chr12:85490126-85496057:-

Coord C1 exon

chr12:85495845-85496057

Coord A exon

chr12:85493785-85493981

Coord C2 exon

chr12:85490126-85493511

Length

197 bp

Sequences

Splice sites

3' ss Seq

TGTTTGTTGCTTGTCTCCAGGCC

3' ss Score

9.68

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

Exon sequences

Seq C1 exon

ACTTCTCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCTAAGAGAGAAGTGACAGAACCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGACACCCAGGAGAAGGGAGAGCAGGAGGAGGGGCGTGAGCGCTGCCGGCGGGCCGCTGCCGTCAAAGCTACACAGACACTACAGGCCAATGAGGCG

Seq A exon

GCCAATGACGTTCTCATTCTCCGGAGCCATGAGCCCAACGCCCCGGGGTCTGCAGGTATCCAGACCTCAGAGAAGCCGAGGGAGGGGCCGGGGAAGTCCCGAAGGGCACTGCCTTTCACAGAGAAGAAGAAAAAAGCCGAGGCATTTAATAAAACCCAGAACCAGGAGAACACCTTCCCTTGTAAAAAGTGCGGCAG

Seq C2 exon

GGTGTTTTACAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAAGAGAAGAAGGCCGCAGCTCTGAGGCTGAAGGAGAAGGAGGCTGCAGCGGCCGCCGCACATCAGCAGGCGCTGAGAGAAGAGAGCGGCGAAGGGGAGAAGGGCTGAGGACCCTGCTGGATCCTATTGCCGGGCTCCCCAGCACCCCAGTCCCTGGAACCTCTAGAAGGGGCCAGGAGAGGGTCACTTGGACTTTGCTCTGCAGAACAAACCCGATAATGAAAAATAAACCGGCTCTTTTATTTACAAAGGCCAAGGACAGTGTTAAGGGCTGCAGGATCCAGTTCTCTCAGTATCTGGTTGGTCCCGAGTTCTGCTTTCCCGGAGCCTAGAGAGGCCGGGCCACTTGGAATGGGCTAGAGCTCTACAGCTGCTTCTCTGATCTCTGCTGTTGCATCTGTGCCTCTTTCATCCCAGGTCCTTAGTAAGCCACCACGGCAAGCCAAGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000042507-'12-15,'12-14,14-15=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features