DreEX0029737 @ danRer10
Exon Skipping
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37403043-37417993:+
Coord C1 exon
chr17:37403043-37403165
Coord A exon
chr17:37405359-37405555
Coord C2 exon
chr17:37413149-37417993
Length
197 bp
Sequences
Splice sites
3' ss Seq
TAACATTTGTTTCCTGTCAGGCT
3' ss Score
7.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGTTCACAGAAACTCGAATCACGGAAAGAAGATGAGGAGAGCAGGAAGTGGGAAGGGTCATGTGACAGGAAGCAAGAAGACAGCCCCGGCAGGGTGACACAATCTCTACAGGCCACCGAAAAT
Seq A exon
GCTGCTGCCGTCTTGGTCTTGAGTCAGGAGAACAGCACCAGACATCCGTCCACATTGGGGGTCAGTCATCCTCCTCATCCACCTCAACCACCATCCAAATCTCGCTCCGACACTGCTGCCAGGAAAACTGGGCCCAGCAACACAGGAAAGGGACAAACCAACCAAGAGGGCGAATTCCCCTGCAAGAAGTGTGGCAG
Seq C2 exon
GATCTTCTATAAGGTGAAGAGCCGCAGTGCCCACATGAAGAGTCACGCCGAGGCGGAGAAGAAAGCGGCGGCGCTCCGGCAGAGAGAGGCCGAGCAGCGGGCAGCAGCCGCCTTGTTAGCGGCCCAGCAGAACGGGGCGATGGCAGATCAGGGCAGAGGGAGGAGAGCGAGCAGCGACGACTCTTCTGATGAAGACGAGGATGCAGATGATGAAGACTGGCGCTAGCTAACAATCCCCTGCCCACGACGAAACAAAAGATAAAAAACATATTTATTTTTACCTTACCAGCCAACAAGACCCATCCCAAAAGAACAGTTTCAGGGACTGGCTCACTCCCGTATAATGTGTGTGTGTGCGTGTGTGTTACGTGTGTATGAGGCGGATAAAGACAGAGACCGATGCTGTAGAGGCATTCAGGGGCTTCGTGTTCAGATATAGGGCTATTGGGAGTGTAAGCCATGCCATCTCAGTGTGAATGTGTGTGTGTCTGCGTGCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864-'14-18,'14-16,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.894 C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCTCTACAGGCCACCGA
R:
CGCCAGTCTTCATCATCTGCA
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]