RnoEX6001401 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77990766-77992027:+
Coord C1 exon
chr1:77990766-77990906
Coord A exon
chr1:77991044-77991225
Coord C2 exon
chr1:77991317-77992027
Length
182 bp
Sequences
Splice sites
3' ss Seq
CATCTTTACCCTCTCTGTAGGTG
3' ss Score
10.97
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTTGAGTACTACTACATCTGGAAAAAAATGGTTAAGTTTGACTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAGGTAGAAAGGACTGAAGACAAG
Seq A exon
GTGACTTGCAGCCCTCGAGAAAGACCCACCCACCGTCCAACTCCTGAATTAAAGATAAAGACCAAGAGTTACAGGAGGGAGTCTATCCTTCACTCCAGCCCAAGTGCAGCCCCCAAGCGCACTCCTGAGCCTCCAGGGAGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGAGAG
Seq C2 exon
GGTGTTTGACAAGATCAAGAGTCGGAATGCCCACATGAAGCGCCACCGCCTCCAGGAGCATGTGGAACCCGTTAGGGTGAAGTGGCCTGTGAAGCCCTACCCACTGAAGGAGGAAGAGGAAGAAGAGGAAGAAGAGCTGGGGGCCGACATGGGTCCCCTGCAGTGGTGACTTCTTGCTAGAAGTTGGTCTGCAAGGAGAGGGGATCCAGCTCTGAACCAGTGCCCTGAGCCCCCGAGAAGTGTTTGGGGCACTCTTATCCTCTCTGTCCTCTCACTTCTAGCCTTGCTAGCGAGTTTGGCTAGCATTTGGACATGAACAGGCAGAAGCTCTCAAGGTAGCTCTGAAGTCATGTGGGTAACCAGAGGCTCTATTCTCTCCTGGTTAATAGTTGCTTACTTGCAGTCCCAGTCACTTGGAGCAGGGGACCCTAGGAAGCAGAAGGTTTGGTCTAGGTGGCATTTAGCCCTGAGCTGTAGGCATGGGACTGACATTGGTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.787 C2=0.786
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTTTGACTGTGGCCGAGC
R:
CAAGAAGTCACCACTGCAGGG
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]