HsaEX6095856 @ hg19
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48023942-48025251:-
Coord C1 exon
chr19:48025111-48025251
Coord A exon
chr19:48024736-48024911
Coord C2 exon
chr19:48023942-48024634
Length
176 bp
Sequences
Splice sites
3' ss Seq
CACTTTTGCTCCCTCTGCAGGTC
3' ss Score
11.2
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCGGAGGAAGTGGAAAGGACAGAGGAAAAG
Seq A exon
GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAGCTGTTGGGAAGTGCAGAGAGCCAGGGCATTTTTCCATGCAGAGAGTGTGAAAG
Seq C2 exon
GGTGTTTGACAAGATCAAGAGTCGAAATGCCCATATGAAGCGGCACCGCCTTCAGGACCACGTGGAGCCCATCATCAGGGTGAAGTGGCCAGTGAAGCCCTTCCAGCTAAAGGAAGAGGAGCTGGGAGCTGACATCGGCCCCCTGCAGTGGTGACTCCCGTGGCAGCAAGTCCGAATGGGGCCTCCAGTGCTGCCCCTCCTCCCTTCGGCCTCTCCAGGGCGTTTGGGGCACCCCTCTGCCTCCCCCCACCCTCCCTGTCCCCTGTTGGCCAACCTGCCTGCAAACATGGAGGGCATTTGGCCACAGATAGGCAGGAGGAGCTCAGTTGTCGGACAGCTATGCAGTCCCTGTCCGGTGGTGCTGGAGGCTCCACTCTCCTTAGGTTCATAGTCTCTCCCCTTCTTTCCCTTCCACTTCTAGAGCAGGGAGGCTTGGGGAGGGGAAAATTTAGCTCTGGGTAGCTCTTAAATCTTAGCCTCAGTTGTGGGGTTTGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=0.713 C2=0.196
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGACGGTAGCTCAGTGC
R:
TAGCTGGAAGGGCTTCACTGG
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)