MmuEX6008496 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16095142-16096334:+
Coord C1 exon
chr7:16095142-16095282
Coord A exon
chr7:16095420-16095601
Coord C2 exon
chr7:16095691-16096334
Length
182 bp
Sequences
Splice sites
3' ss Seq
CATCTTTACCCTCTCTGTAGGTG
3' ss Score
10.97
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTCGAGTACTACTACATCTGGAAAAAGATGGTTAAGTTTGATTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAAGTAGAAAGGACTGAAGACAAG
Seq A exon
GTGACTTGCAGCCCTCGAGAGAGACCTACCCACCGTCCAACTCCTGAGTTAAAGATAAAGACCAAGAGTTACAGGAGAGAGTCTATCCTTCACTCCAGCCCAAGTGCAGCCCCCAAGCGCACTCCTGAGCCTCCAGGGAGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGAGAG
Seq C2 exon
GGTGTTCGACAAGATCAAGAGTCGGAATGCCCACATGAAGCGCCACCGCCTCCAGGAGCATGTGGAACCCGTTAGGGTGAAGTGGCCTGTGAAGCCCTACCCACTGAAGGAGGAAGAGGAGGAGGAAGAAGAGGAGCTGGGGGCCGACATGGGCCCCTTGCAGTGGTGACTTCTTGCTAGAATTTGGTCTGCAAGGAGAGGGGAATTCAGCTCTGAACCAGTGCCCTGGGCCTCTCAGAAGTGTTTGGGGCCCTCTTATCCTCTCTGTCCTCTCACTTCCAGCCTTGCTAGCATTTGGACATGAACAGGCAGAAGCCCTCCAGGTAGCTCTGCAGTCATGTGGGTCATCAGAAGCTCCATTATCTCCTGGTTAATAGTTGCTTACTTGCCGTCCCAGTCACTTGGAGGGGACCCTGGGAGGCAGAAGGTTTGGTCTAAGTGGCATTTAGATCTGAGCTGGCATGGGACTGACATTGGTTAGAAAGAATCAGTAAGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.738 C2=0.786
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGAAGAGAGCTGGATGA
R:
GCTGAATTCCCCTCTCCTTGC
Band lengths:
254-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types