BtaEX6083216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54934641-54935953:-
Coord C1 exon
chr18:54935813-54935953
Coord A exon
chr18:54935427-54935608
Coord C2 exon
chr18:54934641-54935315
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCCCACCCCTGCAGGTC
3' ss Score
11.26
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATCCAGACAAAGACCGTAGCCCAGTGTGTCGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCCAGAAAAGAGGGTCAGGAGGGAGCCAGATGAAGTAGACAGGGCGGAAGCCAAG
Seq A exon
GTCACTTGCAGTCCTCGGGAGAGACCCAGCCACCGTCCAACCCCCGAACTAAAGATAAAGACCAAGAGTTACAGGAGGGAGTCCATCCTCAACTCCAGCCCGAGCACTGGCCCCAAGCGGAGCCCCGAGGCACCCGGGAGTGTGGAGGGCCAGGGCGCCTTTCCCTGCCGGGAGTGTGAGAG
Seq C2 exon
GGTGTTCGATAAGATCAAGAGTCGAAATGCCCACATGAAGCGCCACCGGCTGCAGGACCACGTGGAGCCCATCGTAAGGGTCAAGTGGCCGGTGAAGCCCTTCCAGCTGAAGGAGGAAGAGGAGGAGGAGGAGCTGGGGGCTGACATGGGGCCCCTGCAGTGGTGATTCAGGGCGGGGTGGCAGCGGGGGCAAAGCAGCAAGTCTCCCCAAGGTGCCCCTCTGCCTCCCTGACCCGTTCCTGTCGCCAGGGGGCAGCCCAGCTTGCAGACACGGCAGGCACTGGATCACGAGCAGGGGATGCACGGTCATCTGACTGCCGTGAAGGCCCTGCCGCTGTATCGGAGGCTCCATTCTCTTAGGTTCATAGTCTCTACCCTTCTCAGTTCTACTCTTCCTGGAGCAGTGAGGCTAGGGGAGGGAGCAGGTTAGGTCTGGGTGGCTCTTCATTCTTAGCTTCTGTTTCAGGCTTTGGTTACGTTTATTCAGTAGGCCAAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.820 C2=0.636
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGGGAGCCAGATGAAG
R:
TTGGGGAGACTTGCTGCTTTG
Band lengths:
252-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]