DreEX0009051 @ danRer10
Exon Skipping
Gene
ENSDARG00000088631 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr17:6100509-6110487:+
Coord C1 exon
chr17:6100509-6100604
Coord A exon
chr17:6105689-6105870
Coord C2 exon
chr17:6109977-6110487
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCTATGATTCTCCAAGCAGACA
3' ss Score
5.95
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GGAGACTGGGCAACAAACAACCACAGCGAACCGAAGAAAGAATCCATCAGCAAAAGCAGGGACTCAGAAAACTCCAGCGCTGCGTTTGTCTGTGAA
Seq A exon
ACAAATGAAGAAACGTGGACCCAGAACAATCTCCGTCTGCTCTGCAGCTCTCCAGCAGAACACAGACCATCTGCTCTGACCGAGACTTTGGGTTCGGCTTCTGTGAGAAGTTCTCCATCCAACAGCACGACCAGCGGAGACACCGATTTGGCCCTCGTCTTCCCCTGCACAGAGTGTGGAAA
Seq C2 exon
GGTGTTTTTGAAGGTGAAAAGTCGAAATGCCCACATGAAGACGCACCGCCAGCAGGAAGAAACACTCCTGTGGCACTTTACCGGAGTTCCTAAGCAAGATCATGCGATTGTGACTCCTGGCTGCCCCGTTACGCCACTAAAAGAGCCCATACGCCTTCACCCGTTATCATATCACAGTAACACAGAGGCCAAAACATCCTTAAATGACATGTGCAGCGAGTCAGAACAGGAAATGGACTGTTCGCTGAAGTCACTTCCTGTCCTGCAGAGTCGTTTGAACTTCATGTCAAGTTAGTAGCTTAAAGATTGAGCACACAGAATCAGGGATTTTTTGTAAACTACAAACCAGACTGATTTATGTAAATAGTATAACTTTGTGCAAATTAAAACTATTGCTATGGCACTAGGGTGGTGCAATGTGACAATATATATATATATATATATAATATGTATGAAATAAAAATTTATTGTTTCATATTATGTGCATTGTTTATTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088631-'14-15,'14-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=0.328 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGAAAACTCCAGCGCTG
R:
TGACTCGCTGCACATGTCATT
Band lengths:
258-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]