RnoEX0093505 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15661260-15673207:-
Coord C1 exon
chr9:15673094-15673207
Coord A exon
chr9:15664692-15664895
Coord C2 exon
chr9:15661260-15661471
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTTTATTACCAACAGACC
3' ss Score
8.34
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGGCTAGGGCGGAAACACCGGACACGCCTGGCAGAAATCATTGACGACTGCATG
Seq A exon
ACCAGCGAAGAGGAAGAGGACGCCGAAGAGGAGGAAGAGGACCCGGAAGAAGATAGGAAATCCATAAAAGATGAGGAGAGTGAAGTACCCAAGACACCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACCGAGGGGGCACCCATGCAGGCTGGTGGCCAACCATCAGGCTCCTTCATTTGTGAGATGCCCAACTGTGGGGCT
Seq C2 exon
GTGTTCAGCTCCCGACAGGCACTGAATGGCCACGCCCGCATCCATGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCTGTCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTATTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACCGACCCCACCACCATCTTCCCCTGCAAGGAGTGTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-'22-23,'22-21,23-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.853 C2=0.831
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(48.3=73.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGCGTGGAGTACTAC
R:
ACACTCCTTGCAGGGGAAGAT
Band lengths:
303-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]