MmuEX6078196 @ mm9
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47478015-47490867:+
Coord C1 exon
chr17:47478015-47478128
Coord A exon
chr17:47485599-47485805
Coord C2 exon
chr17:47490682-47490867
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTTTATTAACAACAGACC
3' ss Score
6.14
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGACTAGGCCGGAAACACCGGACACGCCTGGCGGAAATCATTGACGACTGCATG
Seq A exon
ACCAGCGAAGAGGAAGAGGAGGCCGAGGAGGAAGAAGAGGACCCAGAAGAAGATAGGAAATCCATAAAAGAAGAGGAGAGTGAAGTGGCCAAGTCTCCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACTGAGGGGCCACCCATGCAGGCTGTTGGCCAACAACCATCAGGCAACTTCATTTGTGAAATGCCCAACTGTGGGGCT
Seq C2 exon
GTGTTCAGCTCCCGACAGGCACTGAACGGTCACGCCCGCATCCACGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCCATCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTACTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACGGACCCCACCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'28-20,'28-18,29-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.841 C2=0.952
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(48.3=73.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTCCAAGACAGTGGCT
R:
GGTCCGTCTCTCCACTGGTG
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: