GgaEX0014667 @ galGal3
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
NA
Coordinates
chr3:24019915-24021671:-
Coord C1 exon
chr3:24021558-24021671
Coord A exon
chr3:24020612-24020800
Coord C2 exon
chr3:24019915-24020123
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAATGCTCCATCTATTTCAGACA
3' ss Score
6.83
5' ss Seq
GCTGTACGT
5' ss Score
5.68
Exon sequences
Seq C1 exon
GTTAAGTCTAAGACAGTTGCACAGTGCGTGGAATACTACTATACCTGGAAGAAAATCCTGCGCTGGGGACGGAAACACAGAACGCGTTTAGAGAAGAAAAGAGAGGAATGCATG
Seq A exon
ACAAGTGGAGAAGAGGAAGTGTTAGAGGAAGATGAGGAGATTGAAGAAGACAGAAAGGAAGAAAGGGAAATGCAGAAGTCTCCTGACCCACCAGCTATCCCTCTTGTTGGACCTATAGACCTGCCTACCCTTCAGAGTCTTTCACTTTCTTCATCCTCTTTCATCTGTGAAATGCCAAACTGTGGTGCT
Seq C2 exon
GTGTTCAGTTCCCGACAAGCACTAAATGGCCACGCTCGCATTCATGGAGGTACAAATCAGGTGACAAAGCCACGATGCACCATTGCAGGCACTAAGCAGAAATCTGGTACACAGAGCGGGTACTGCTCCATCAAGAGCTCACCTGCCCACAGCACAACAAGTGGTGAGACCGACCCAACAACAATTTTTCCTTGTAAGGAATGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.158 A=0.603 C2=0.671
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=42.1)
A:
NO
C2:
PF0009621=zf-C2H2=PU(30.4=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAGAAAATCCTGCGCT
R:
GGTCGGTCTCACCACTTGTTG
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event