MmuEX6078196 @ mm10
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47341066-47353945:+
Coord C1 exon
chr17:47341066-47341179
Coord A exon
chr17:47348650-47348856
Coord C2 exon
chr17:47353733-47353945
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTTTATTAACAACAGACC
3' ss Score
6.14
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGAAGTCCAAGACAGTGGCTCAGTGCGTGGAGTACTACTACACTTGGAAGAAGATAATGCGACTAGGCCGGAAACACCGGACACGCCTGGCGGAAATCATTGACGACTGCATG
Seq A exon
ACCAGCGAAGAGGAAGAGGAGGCCGAGGAGGAAGAAGAGGACCCAGAAGAAGATAGGAAATCCATAAAAGAAGAGGAGAGTGAAGTGGCCAAGTCTCCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACTGAGGGGCCACCCATGCAGGCTGTTGGCCAACAACCATCAGGCAACTTCATTTGTGAAATGCCCAACTGTGGGGCT
Seq C2 exon
GTGTTCAGCTCCCGACAGGCACTGAACGGTCACGCCCGCATCCACGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCCATCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTACTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACGGACCCCACCACCCATCTTCCCCTGCAAGGAGTGTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'44-34,'44-32,46-34
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGCGTGGAGTACTAC
R:
ACACTCCTTGCAGGGGAAGAT
Band lengths:
304-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types