BtaEX6097552 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15954569-15964854:-
Coord C1 exon
chr23:15964741-15964854
Coord A exon
chr23:15957390-15957590
Coord C2 exon
chr23:15954569-15954780
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTGTATTCCCTTAACACCAGACG
3' ss Score
5.4
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GTGAAGTCCAAGACGGTGGCTCAGTGTGTGGAGTACTATTACACGTGGAAAAAAATCATGAGGTTGGGGAGGAAACACCGGACACGGCTCTCAGAAATCATCGATGACTGTGTG
Seq A exon
ACGAGTGAAGAAGATGAAGAGGTAGAGGAGGAGGAGGATCCGGAAGAAGACAGGAAATCCACAAGAGAAGAGGAGAGTGAATTGCCCAAGTCCCCGGAGCCGCCGCAAGGCCCGGTCCTGGCTCCCGCAGAGGGGCCGCCCCTGCAGGCCCTGGGCCAGCCCTCGGGCTCCTTCATCTGTGAAATGCCCAACTGCGGGGCG
Seq C2 exon
GTGTTCAGCTCCCGGCAGGCACTGAACGGCCACGCCCGCATCCATGGTGGCACCAACCAGGTGACCAAAGCTCGGGGCACTGTTCCCTCTGGGAAGCAGAAGCCTGGCAGTGCCCAGAGTGGGTACTGCTCGGTGAAGAGCTCACCCTCCCACAGCACCACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAAGAGTGCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321-'14-16,'14-14,15-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.776 C2=0.831
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(49.2=76.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAGTGTGTGGAGTACT
R:
CTTTGCAGGGGAAGATGGTGG
Band lengths:
300-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]