MmuEX6078195 @ mm10
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47348650-47361958:+
Coord C1 exon
chr17:47348650-47348856
Coord A exon
chr17:47353733-47353945
Coord C2 exon
chr17:47358910-47361958
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCGCTCCCTTTCTTCCTCAGGTG
3' ss Score
11.8
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACCAGCGAAGAGGAAGAGGAGGCCGAGGAGGAAGAAGAGGACCCAGAAGAAGATAGGAAATCCATAAAAGAAGAGGAGAGTGAAGTGGCCAAGTCTCCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACTGAGGGGCCACCCATGCAGGCTGTTGGCCAACAACCATCAGGCAACTTCATTTGTGAAATGCCCAACTGTGGGGCT
Seq A exon
GTGTTCAGCTCCCGACAGGCACTGAACGGTCACGCCCGCATCCACGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCCATCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTACTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACGGACCCCACCACCCATCTTCCCCTGCAAGGAGTGTGGCAA
Seq C2 exon
GGTCTTCTTTAAGATCAAAAGCCGGAATGCGCACATGAAAACCCACCGGCAGCAAGAGGAGCAGCAGAGGCAGAAGGCTCAGAAGGCAGCCTTCGCAGCAGAAATGGCAGCCACCATCGAGAGGACTACGGGGCCGGTGGGGGCGCCCGAGCTGCTGCCCCTGGACCAACTGAGTCTGATGAAGCCAGTCAAGGACGTGGACATCCTGGATGACGATGTGGTCCAGCAGTTAGGCGTCATGGACGAGGCCGAGGTGGTAGGCACGGATCTTCTCTTGGACGACCAAGATTCGGTTTTGCTTCAGGGTGATACAGAACTCTAAACCCTCCCGTTCATCACCTAGAGACACAGAAGCCACGGCCTCCACCTCTGTCACCCGTAGAACCTGGACTTCCTGCTCCTTTGGAAACCCTTTTAAACTACCTGTTTAAAAAGCGGTCCTTTTCTTCAGGTTAAGGGAGGGGAAAAATCCAGTTCTTTCTCTTTTACCTTCTTTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'46-36,'46-34,49-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGGCCAAGTCTCCAGA
R:
TCAGACTCAGTTGGTCCAGGG
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types