GgaEX6029358 @ galGal3
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
NA
Coordinates
chr3:24018569-24020800:-
Coord C1 exon
chr3:24020612-24020800
Coord A exon
chr3:24019915-24020123
Coord C2 exon
chr3:24018569-24019248
Length
209 bp
Sequences
Splice sites
3' ss Seq
TCCACTCTGCTCTCCATCAGGTG
3' ss Score
9.08
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAAGTGGAGAAGAGGAAGTGTTAGAGGAAGATGAGGAGATTGAAGAAGACAGAAAGGAAGAAAGGGAAATGCAGAAGTCTCCTGACCCACCAGCTATCCCTCTTGTTGGACCTATAGACCTGCCTACCCTTCAGAGTCTTTCACTTTCTTCATCCTCTTTCATCTGTGAAATGCCAAACTGTGGTGCT
Seq A exon
GTGTTCAGTTCCCGACAAGCACTAAATGGCCACGCTCGCATTCATGGAGGTACAAATCAGGTGACAAAGCCACGATGCACCATTGCAGGCACTAAGCAGAAATCTGGTACACAGAGCGGGTACTGCTCCATCAAGAGCTCACCTGCCCACAGCACAACAAGTGGTGAGACCGACCCAACAACAATTTTTCCTTGTAAGGAATGTGACAA
Seq C2 exon
AGTATTTTTCAGAATCAAAAGCCGCAATGCTCATATGAAGACACACAGACAACAAGAAGAACAGCAGAGACAGAAGGCTCAGAAAGCTGCAGTGGCAGCAGAAATGGCAGCCACTATTGTGAGAACTACTGGGCCAGCTGGGCATAGTTTGATCCCTCTGGATCATATGAGTTTGGTTAAACATGTTGGAAATGTCGGTGACATTGATGACGATGTTGTTCAGGAGTTAGGTGGTGTCATGGAAGAGCATGAAGTCATGGATGCTGACCTTTTATTGGATGATGAAGATGCAGACCTACTGCAGGATGATGCTGAGTTGTAAATAAAGTTGTTTGATAAAGACAGCTACTGAGCACACCCTGAATGCATCAGTCAGGGAACCTGGACTGTTCGTTTATTCCCCACTGATTGTAAACTACCTGATGAAAAATGATAATTCTTTTATCCAGGTCCAGAAAAGAAATATGCTTTTTTTCCCTTTTTTATTAATTTGTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896-'13-14,'13-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.671 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=PU(30.4=10.0)
C2:
PF0009621=zf-C2H2=PD(65.2=13.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACCAGCTATCCCTCTT
R:
TGTCACCGACATTTCCAACATGT
Band lengths:
308-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]