GgaEX6029358 @ galGal4
Exon Skipping
Gene
ENSGALG00000009896 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr3:22205135-22207008:-
Coord C1 exon
chr3:22206820-22207008
Coord A exon
chr3:22206123-22206331
Coord C2 exon
chr3:22205135-22205456
Length
209 bp
Sequences
Splice sites
3' ss Seq
TCCACTCTGCTCTCCATCAGGTG
3' ss Score
9.08
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACAAGTGGAGAAGAGGAAGTGTTAGAGGAAGATGAGGAGATTGAAGAAGACAGAAAGGAAGAAAGGGAAATGCAGAAGTCTCCTGACCCACCAGCTATCCCTCTTGTTGGACCTATAGACCTGCCTACCCTTCAGAGTCTTTCACTTTCTTCATCCTCTTTCATCTGTGAAATGCCAAACTGTGGTGCT
Seq A exon
GTGTTCAGTTCCCGACAAGCACTAAATGGCCACGCTCGCATTCATGGAGGTACAAATCAGGTGACAAAGCCACGATGCACCATTGCAGGCACTAAGCAGAAATCTGGTACACAGAGCGGGTACTGCTCCATCAAGAGCTCACCTGCCCACAGCACAACAAGTGGTGAGACCGACCCAACAACAATTTTTCCTTGTAAGGAATGTGACAA
Seq C2 exon
AGTATTTTTCAGAATCAAAAGCCGCAATGCTCATATGAAGACACACAGACAACAAGAAGAACAGCAGAGACAGAAGGCTCAGAAAGCTGCAGTGGCAGCAGAAATGGCAGCCACTATTGTGAGAACTACTGGGCCAGCTGGGCATAGTTTGATCCCTCTGGATCATATGAGTTTGGTTAAACATGTTGGAAATGTCGGTGACATTGATGACGATGTTGTTCAGGAGTTAGGTGGTGTCATGGAAGAGCATGAAGTCATGGATGCTGACCTTTTATTGGATGATGAAGATGCAGACCTACTGCAGGATGATGCTGAGTTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009896-'25-20,'25-19,27-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.671 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACCAGCTATCCCTCTT
R:
TGTCACCGACATTTCCAACATGT
Band lengths:
308-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]