BtaEX6097553 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15948727-15957590:-
Coord C1 exon
chr23:15957390-15957590
Coord A exon
chr23:15954569-15954780
Coord C2 exon
chr23:15948727-15949270
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCTTTCTTCCCCAGGTG
3' ss Score
13.12
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACGAGTGAAGAAGATGAAGAGGTAGAGGAGGAGGAGGATCCGGAAGAAGACAGGAAATCCACAAGAGAAGAGGAGAGTGAATTGCCCAAGTCCCCGGAGCCGCCGCAAGGCCCGGTCCTGGCTCCCGCAGAGGGGCCGCCCCTGCAGGCCCTGGGCCAGCCCTCGGGCTCCTTCATCTGTGAAATGCCCAACTGCGGGGCG
Seq A exon
GTGTTCAGCTCCCGGCAGGCACTGAACGGCCACGCCCGCATCCATGGTGGCACCAACCAGGTGACCAAAGCTCGGGGCACTGTTCCCTCTGGGAAGCAGAAGCCTGGCAGTGCCCAGAGTGGGTACTGCTCGGTGAAGAGCTCACCCTCCCACAGCACCACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAAGAGTGCGGCAA
Seq C2 exon
AGTCTTCTTCAAGATCAAAAGCCGAAATGCACACATGAAAACTCACAGACAGCAGGAGGAACAGCAGAGGCAGAAAGCTCAGAAGGCGGCGTTCGCGGCCGAGATGGCAGCCACAATCGAGAGGACTACGGGGCCGGTGGGGCCGCAGGGGCTGCTGCCCCTGGACCAGCTGAGTCTGATCAAACCCATCAAGGACGTGGACCTCCTCGATGACGACGTCGTCCAGCAGCTAGGAGGCGTCATGGCAGAGGCCGAGGTTGTGGACACCGGTCTCCTCCTGGATGATCAGGCTTCAGTTTTGCTTCAGGGTGACACGGAACTCTAAAGGCCCCGCGTGTCGCTTTGAGACAGCGAAAACCCACAGCCTCCAGCCTCCTTCATCAGGACACTGGGACTGCCCGCTTGTTTTGTAATCATTTTAAACTACCTGTTTAAAAAGTGGTCTTTTTTTTTTCCAGGTTTAGAAACAAATCGGTTTTTTCTTTTCCTTTTATTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.831 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAATTGCCCAAGTCCCC
R:
ATCAGACTCAGCTGGTCCAGG
Band lengths:
307-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]