HsaEX0067003 @ hg38
Exon Skipping
Gene
ENSG00000124496 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr6:42225225-42243361:-
Coord C1 exon
chr6:42243248-42243361
Coord A exon
chr6:42232681-42232892
Coord C2 exon
chr6:42225225-42228669
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCTTTCTTCCCCAGGTG
3' ss Score
13.12
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTGAAGTCCAAGACGGTGGCTCAGTGCGTGGAGTACTACTACACGTGGAAAAAGATCATGCGGCTGGGGCGGAAACACCGGACACGCCTGGCAGAAATCATCGACGATTGTGTG
Seq A exon
GTGTTCAGCTCCCGACAGGCACTGAATGGCCATGCCCGCATCCACGGGGGCACCAACCAGGTGACCAAGGCCCGAGGTGCCATCCCCTCTGGGAAGCAGAAGCCTGGTGGCACCCAGAGTGGGTACTGTTCGGTAAAGAGCTCACCCTCTCACAGCACCACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAGGAGTGTGGCAA
Seq C2 exon
AGTCTTCTTCAAGATCAAAAGCCGAAATGCACACATGAAAACTCACAGGCAGCAGGAGGAACAACAGAGGCAAAAGGCTCAGAAGGCGGCTTTTGCAGCTGAGATGGCAGCCACGATTGAGAGGACTACGGGGCCCGTGGGGGCGCCGGGGCTGCTGCCCCTGGACCAGCTGAGTCTGATCAAACCCATCAAGGATGTGGACATCCTCGACGACGACGTCGTCCAGCAGTTGGGAGGTGTCATGGAAGAGGCTGAAGTTGTGGACACCGATCTTCTCTTGGATGATCAAGATTCAGTCTTGCTTCAGGGTGACGCAGAACTATAAAGCCCTGTGTGTCACTTAGAGACAGTGAAAACCCACGGCCTCCATCTTCATTAATCAGGAAACCTGGACTGCCTGCTTGTTTTGTAACCCTTTTAAACTACCTGTTTTAAAAGTGGTCATTTTATTCAGGTTTAGAAAAAAAAATCCTATTTCTTTTCCTTTTATTTAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124496_MULTIEX2-3/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.826 C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000372922fB28753
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGCCTGGCAGAAATCATC
R:
ATCGGTGTCCACAACTTCAGC
Band lengths:
304-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development