RnoEX6038751 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15655735-15664895:-
Coord C1 exon
chr9:15664692-15664895
Coord A exon
chr9:15661260-15661471
Coord C2 exon
chr9:15655735-15656280
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCGCTCCCTTTCTTCCTCAGGTG
3' ss Score
11.8
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACCAGCGAAGAGGAAGAGGACGCCGAAGAGGAGGAAGAGGACCCGGAAGAAGATAGGAAATCCATAAAAGATGAGGAGAGTGAAGTACCCAAGACACCAGAGCCACCGCCTGCCCCTGCCCTGGCTCCCACCGAGGGGGCACCCATGCAGGCTGGTGGCCAACCATCAGGCTCCTTCATTTGTGAGATGCCCAACTGTGGGGCT
Seq A exon
GTGTTCAGCTCCCGACAGGCACTGAATGGCCACGCCCGCATCCATGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCTGTCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTATTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACCGACCCCACCACCATCTTCCCCTGCAAGGAGTGTGGCAA
Seq C2 exon
GGTCTTCTTTAAGATCAAAAGCCGGAATGCACACATGAAAACCCACCGGCAGCAAGAGGAGCAGCAGAGGCAGAAGGCTCAGAAGGCAGCCTTCGCGGCAGAAATGGCAGCCACCATCGAGAGGACTACGGGGCCGGTGGGGGCACCGGAGCTGCTGCCTCTGGACCAGCTGAGCCTGATGAAGCCCAAGGACGTGGACATCCTGGATGATGATATGGTCCAGCAGTTAGGCGTCATGGACGAGGCTGAGGTGGTAGGCACGGATCTTCTCTTGGACAACCAAGATTCAGTTTTGCTTCAGGGTGATACAGAACTCTAAACCCCCCGTTCATCACCTAGAGACACAGAAGCCACGGCCTCCACCTCCGTTTGTCTGCAGAACCTGGACTTCCTGCTCCTTTGGAAACCCTTTTAAACTACCTGTTTAAAAAGTGGTCCTTTTCTTCAGGTTAAGGGAGGGGAAAATCCAGTTCTTTCTCTTTTACCTTCTTTTGCATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.831 C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGGACCCGGAAGAAG
R:
TAGTCCTCTCGATGGTGGCTG
Band lengths:
301-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]