MmuEX6078194 @ mm9
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47490682-47496407:+
Coord C1 exon
chr17:47490682-47490867
Coord A exon
chr17:47490869-47490894
Coord C2 exon
chr17:47495859-47496407
Length
26 bp
Sequences
Splice sites
3' ss Seq
AGAGACGGACCCCACCACCCATC
3' ss Score
-14.43
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTGTTCAGCTCCCGACAGGCACTGAACGGTCACGCCCGCATCCACGGCGGCACCAACCAGGTGGCTAAGACCCGAGGTGCCATCCCCTCTGGGAAGCAGAAGCCAGGTGGCACCCAGAGTGGGTACTGCTCAGTGAAGAGTTCACCATCTCACAGTACCACCAGTGGAGAGACGGACCCCACCACC
Seq A exon
ATCTTCCCCTGCAAGGAGTGTGGCAA
Seq C2 exon
GGTCTTCTTTAAGATCAAAAGCCGGAATGCGCACATGAAAACCCACCGGCAGCAAGAGGAGCAGCAGAGGCAGAAGGCTCAGAAGGCAGCCTTCGCAGCAGAAATGGCAGCCACCATCGAGAGGACTACGGGGCCGGTGGGGGCGCCCGAGCTGCTGCCCCTGGACCAACTGAGTCTGATGAAGCCAGTCAAGGACGTGGACATCCTGGATGACGATGTGGTCCAGCAGTTAGGCGTCATGGACGAGGCCGAGGTGGTAGGCACGGATCTTCTCTTGGACGACCAAGATTCGGTTTTGCTTCAGGGTGATACAGAACTCTAAACCCTCCCGTTCATCACCTAGAGACACAGAAGCCACGGCCTCCACCTCTGTCACCCGTAGAACCTGGACTTCCTGCTCCTTTGGAAACCCTTTTAAACTACCTGTTTAAAAAGCGGTCCTTTTCTTCAGGTTAAGGGAGGGGAAAAATCCAGTTCTTTCTCTTTTACCTTCTTTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'30-22,'30-21,31-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.000 C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGGGTACTGCTCAGT
R:
GGGTTTTCATGTGCGCATTCC
Band lengths:
117-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: