BtaALTA0001832-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018105 | ACVR2B
Description
Bos taurus activin A receptor, type IIB (ACVR2B), mRNA. [Source:RefSeq mRNA;Acc:NM_174495]
Coordinates
chr22:11887492-11888056:+
Coord C1 exon
chr22:11887492-11887699
Coord A exon
chr22:11887947-11887950
Coord C2 exon
chr22:11887951-11888056
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
ATGGGAAACTGTGCCTCCAGGCA
3' ss Score
3.31
Exon sequences
Seq C1 exon
GTTCGGGGCGCGGGGAGGCCGAGACACGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAGGGCGAGCGGGACAAGCGGCTGCACTGCTACGCCTCCTGGCGCAACAGCTCGGGCACCATCGAGCTCGTCAAGAAAGGCTGCTGGCTGGACGACTTCAACTGCTACGACAG
Seq A exon
GCAG
Seq C2 exon
GAGTGCGTGGCCACCGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGCGAAGGCAACTTCTGCAACGAGCGCTTCACCCACCTGCCCGAGGCGGGCGGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018105-5-2,5-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGCTCGTCAAGAAAGGC
R:
CAGCAGCAGAAGTACACCTGG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development