HsaALTA1017732-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000114739 | ACVR2B
Description
activin A receptor type 2B [Source:HGNC Symbol;Acc:HGNC:174]
Coordinates
chr3:38477287-38477970:+
Coord C1 exon
chr3:38477287-38477494
Coord A exon
chr3:38477861-38477864
Coord C2 exon
chr3:38477865-38477970
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCC
5' ss Score
5.35
3' ss Seq
GGAAAATTCTGTGCCTCCAGGCA
3' ss Score
4.69
Exon sequences
Seq C1 exon
GCTCTGGGCGTGGGGAGGCTGAGACACGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAAGGCGAGCAGGACAAGCGGCTGCACTGCTACGCCTCCTGGCGCAACAGCTCTGGCACCATCGAGCTCGTGAAGAAGGGCTGCTGGCTAGATGACTTCAACTGCTACGATAG
Seq A exon
GCAG
Seq C2 exon
GAGTGTGTGGCCACTGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGTGAAGGCAACTTCTGCAACGAACGCTTCACTCATTTGCCAGAGGCTGGGGGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114739-8-3,8-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGCTCGTGAAGAAGGG
R:
CAGCAGCAGAAGTACACCTGG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains