DreALTA0003954-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044422 | acvr2b
Description
activin A receptor, type IIB [Source:ZFIN;Acc:ZDB-GENE-980526-549]
Coordinates
chr24:41312312-41316803:-
Coord C1 exon
chr24:41316596-41316803
Coord A exon
chr24:41312416-41312419
Coord C2 exon
chr24:41312312-41312415
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TGTGCGTGTGCGCACTACAGACA
3' ss Score
5.49
Exon sequences
Seq C1 exon
ACCCCAGTCATGGCGAGGTGGAGACGCGGGAGTGTTTGTACTATAACGTTAACTGGGAGGTGGAGAAGACGAACCGTAGCGGTGTGGAGCGATGTGAAGGAGAGAAAGACAAACGCTCGCACTGCTACGCCTCCTGGAGGAACAACTCCGGCTCCATCCAGCTCGTCAAGAAGGGCTGCTGGCTCGACGACTTCAACTGCTACGACAG
Seq A exon
ACAG
Seq C2 exon
GAGTGTGTGGCCACAGAGGAGAATCCTCAGGTGTTTTTCTGCTGCTGTGAAGGAAACTTCTGCAATGAGAGATTCACACACCTGCCGGACATCAGTGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044422-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCTCGTCAAGAAGGG
R:
GCAGCAGAAAAACACCTGAGG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]