GgaALTA1003417-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006158 | ACVR2B
Description
activin receptor type-2B precursor [Source:RefSeq peptide;Acc:NP_989648]
Coordinates
chr2:5735920-5739855:-
Coord C1 exon
chr2:5739644-5739855
Coord A exon
chr2:5736026-5736029
Coord C2 exon
chr2:5735920-5736025
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TGCTGCTGCGTGTGACGCAGGCA
3' ss Score
5.83
Exon sequences
Seq C1 exon
TCAGGACCAGGTCACGGGGAGGCAGAGACGAGGGAATGCATTTACTACAACGCCAACTGGGAGCTGGAGAAGACCAACCAGAGTGGCGTGGAGCGCTGCGAGGGGGAGAAGGACAAGCGGCTCCACTGCTACGCCTCCTGGAGAAACAACTCGGGATCCATTGAGCTGGTGAAGAAAGGCTGCTGGTTAGATGACTTCAACTGTTATGACAG
Seq A exon
GCAG
Seq C2 exon
GAGTGCGTAGCCACAGAAGAAAACCCTCAAGTGTTTTTCTGCTGCTGCGAGGGCAACTACTGCAATGAGAAATTCACCCACTTGCCTGAAGTAACTGGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006158-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=84.5)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGAAAGGCTGCTGGTT
R:
CTCGCAGCAGCAGAAAAACAC
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]