DreALTA0003952-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:870359-870752:+
Coord C1 exon
chr6:870359-870566
Coord A exon
chr6:870649-870651
Coord C2 exon
chr6:870652-870752
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GCTGTGTGTTGTGTGTGCAGCAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
GTGCGATTCTGGGCCGCTCGGAGACACAGGAGTGTGTGTATTATAATGTGAGCTGGGAGAAGGACGGAACAAACAGGAGCGGCACGGAGTCATGTTATGGAGAAAAGGACAAGCGGCGACACTGTTTCTCCACCTGGAAGAACCGCTCGGGGACCATCGAGATGGTCAAGCAGGGCTGCTGGCTGGACGATGTCAACTGCTACGACAG
Seq A exon
CAG
Seq C2 exon
TGAGTGTGTGGAGCGCAAAGAGAATATTGATGTCTTCTTCTGCTGCTGCGAGGGAAACTTGTGCAACCAGAAGTTTCACTACAATCCAGAGACGGTTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGATGGTCAAGCAGGG
R:
CGCAGCAGCAGAAGAAGACAT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]