MmuALTA0001110-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061393 | Acvr2b
Description
activin receptor IIB [Source:MGI Symbol;Acc:MGI:87912]
Coordinates
chr9:119427455-119428076:+
Coord C1 exon
chr9:119427455-119427662
Coord A exon
chr9:119427967-119427970
Coord C2 exon
chr9:119427971-119428076
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CGGGGACCCTGGGCCCTCAGGCA
3' ss Score
3.47
Exon sequences
Seq C1 exon
GTTCCGGGCGAGGGGAGGCTGAGACTCGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAGGGGGAACAGGACAAGCGGCTGCACTGCTACGCCTCGTGGCGCAACAGCTCGGGCACCATCGAGCTGGTGAAGAAGGGCTGCTGGCTAGATGACTTCAATTGCTACGACAG
Seq A exon
GCAG
Seq C2 exon
GAGTGTGTGGCCACCGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGCGAAGGCAACTTCTGCAACGAGCGCTTCACCCACTTGCCGGAGCCTGGGGGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061393-7-2,7-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGCTGGTGAAGAAGGG
R:
CAGCAGCAGAAGTACACCTGG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types