DreALTA0000054-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103108 | ACVR2B (2 of 2)
Description
activin A receptor, type IIB [Source:HGNC Symbol;Acc:HGNC:174]
Coordinates
chr2:52238463-52243702:+
Coord C1 exon
chr2:52238463-52238670
Coord A exon
NA
Coord C2 exon
chr2:52243593-52243702
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTGTGTGTGTGTGAGAGCAGACA
3' ss Score
-1.63
Exon sequences
Seq C1 exon
GAGTCAGTCATGCGGAAGTGGCGACTAGAGAGTGTGTCTATTATAACGATAACTGGCGGACGGAGAAAACCAATCAGAGCGGGTTCGAGAGGTGCGAGGGGGAGAAAGATAAGAGGCTTCACTGTTACGCGTCATGGCTGAACTCCACCGGCACCATCCGCCTGGTCAAGAAGGGCTGCTGGCTCGACGACTTCAACTGCTATGACAG
Seq A exon
NA
Seq C2 exon
ACAGGAGTGTGTGGCCACAGAGGAGAGTCCGCAGGTGTTCTTCTGCTGCTGTGAAGGGAACTATTGCAACGAGAAGTTCACACACCTGCCGGAAGCCATCGCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103108-3-6,3-5,3-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCGACGACTTCAACTG
R:
AGTTCCCTTCACAGCAGCAGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]