BtaALTA0010706-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33503657-33504949:+
Coord C1 exon
chr13:33503657-33503816
Coord A exon
chr13:33504773-33504862
Coord C2 exon
chr13:33504863-33504949
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TTAATTCATGACTATTGCAGCAA
3' ss Score
5.09
Exon sequences
Seq C1 exon
GTATAATTTGGGTGACTACAGTGGGGAGATCATGTCTGAGGTCATGGCTCAGAGGCAGCCAGTGAAGCCCACATACACCATCCCCCTCATCCCCATCGCCAACAGCAGTCAGTTCAAACACCAGGAGGCGATGGACGTGAAGGAATTTAAAGTTAATAAG
Seq A exon
CAAGATAAGGCCGATCTTATCCGACCTAAACGTAAATATGAAAAGAAGCCCAAAGTCTTACCTTCGTCTGCTGCTGCTGCTCCTCAACAG
Seq C2 exon
GCCAGCCCCACCACGCTGCCGGTCTTCAACGCTAAAGACCTGAACCAGTATGACTTCCCCAGCTCAGATGAAGAGCCTCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552-10-8,10-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCACATACACCATCCC
R:
TCATCTGAGCTGGGGAAGTCA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development