HsaALTA1020380-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr10:32287098-32291322:-
Coord C1 exon
chr10:32291163-32291322
Coord A exon
chr10:32287271-32287274
Coord C2 exon
chr10:32287098-32287270
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
AATTCATGTCTTTGTTGCAGCAA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTATAATTTGGGCGACTACAATGGAGAGATCATGTCTGAGGTTATGGCACAGAGACAGCCAATGAAACCTACTTATGCCATCCCCATCATCCCTATTACTAATAGCAGTCAATTTAAACACCAGGAAGCAATGGATGTGAAGGAGTTCAAAGTTAATAAG
Seq A exon
CAAG
Seq C2 exon
ATAAAGCCGATCTTATCCGACCGAAACGGAAATATGAAAAGAAGCCCAAAGTCTTACCATCGTCTGCCGCTGCTACTCCCCAACAGACGAGTCCTGCTGCACTGCCAGTCTTCAATGCTAAAGATCTGAATCAGTATGACTTTCCCAGCTCAGACGAAGAACCTCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-27-22,27-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.695
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCCCCATCATCCCTAT
R:
CGGTCGGATAAGATCGGCTTT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains