MmuALTA1012116-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6450466-6452392:-
Coord C1 exon
chr18:6452233-6452392
Coord A exon
chr18:6450636-6450639
Coord C2 exon
chr18:6450466-6450635
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
CATTCATGCCTATGTTGCAGCAA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTATAATTTAGGTGACTATAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACTTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGATGCCACGGACTCGAAGGAGTTCAAAGTTAACAAG
Seq A exon
CAAG
Seq C2 exon
ATAAGGCTGATCTTATCCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCCCCATCTGCTGCCGCCCCTCAGCAGCAGAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-18-16,18-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.862
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATTACTAACAGCAGCCA
R:
CTTCGGCCGGATAAGATCAGC
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types