GgaALTA0003751-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14067004-14068624:+
Coord C1 exon
chr2:14067004-14067163
Coord A exon
chr2:14068448-14068450
Coord C2 exon
chr2:14068451-14068624
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGCTGCTTTTTTCGCTTCAGCAG
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTATAATTTGGGTGATTACAGTGGAGAGATTGTGTCTGAGGTCATGGCACAGCGGCAGCCAATGAAACCTACCTATGCTATTCCCATCATTCCTGTGACTAACAGCAGTCCTTTCAAACATCAAGAAACTATGGAACTGAAAGAATATAAAGTTAACAAA
Seq A exon
CAG
Seq C2 exon
GATAAATCTGATGTTATTCGGCCTAAAAGAAAGTATGAGAAGAAGCCAAAAGTCTTACCTTCGTCTGCTGCTGCTACTCCTCAACAGACGAGTCCTGCTGCACTGCCAGTCTTCAATGCTAAAGATTTGAATCAGTATGATTTCCCTAGCTCGGATGAAGAACCCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTAACAGCAGTCCTTTCA
R:
TCTCATACTTTCTTTTAGGCCGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]