RnoALTA0013962-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57318146-57320156:-
Coord C1 exon
chr17:57319997-57320156
Coord A exon
chr17:57318316-57318319
Coord C2 exon
chr17:57318146-57318315
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATT
5' ss Score
4.15
3' ss Seq
GACTCGTGTCTGTGTTGCAGCAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTATAATTTAGGTGACTACAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACCTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGACGTCACGGATGCGAAGGAGTTCAAAGTTAACAAG
Seq A exon
CAAG
Seq C2 exon
ATAAGGCTGATCTTATTCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCGTCGTCTGCTGCCGCACCCCAGCAGCCAAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834-14-10,14-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGATGCGAAGGAGTTCAA
R:
GACGACGGTAAGACTTTGGGC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]