BtaALTA0011438-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010653 | FAM73B
Description
Bos taurus family with sequence similarity 73, member B (FAM73B), mRNA. [Source:RefSeq mRNA;Acc:NM_001076053]
Coordinates
chr11:99544258-99545599:+
Coord C1 exon
chr11:99544258-99544373
Coord A exon
chr11:99545527-99545531
Coord C2 exon
chr11:99545532-99545599
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTCTGTGCTTCCCCTTAGGAC
3' ss Score
11.01
Exon sequences
Seq C1 exon
CTCTTTGAGTCCCTGCAGGTCGGAGATTACCCAATCCCACTCTCCAGGCCCGCTGCCGCCTACGAGGAGGCCCTGCAGCTGGTAAAGGAGGGCAAAGTCCCCTGCCGGACCCTCAG
Seq A exon
GACAG
Seq C2 exon
AGCTGCTGGGCTGCTACAGCGACCAGGACTTTCTAGCCAAGCTGCATTGTGTGCGGCAGGCTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010653-10-11,10-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTAAAGGAGGGCAAA
R:
ACACAATGCAGCTTGGCTAGA
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development