RnoALTA0024109-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8943802-8944336:+
Coord C1 exon
chr3:8943802-8943917
Coord A exon
chr3:8944282-8944286
Coord C2 exon
chr3:8944287-8944336
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTCTATCCTTTTCCTCAGGAC
3' ss Score
11.07
Exon sequences
Seq C1 exon
CTCTTTGAGTCCCTGCAGATCGGAGAGTACCCGCTTCCTCTCTCCAGGCCCGCTGCTGCCTACGAGGAGGCTCTGCAGCTGGTGAAGGAGGGGAAAGTACCTTGTCGAACACTCAG
Seq A exon
GACAG
Seq C2 exon
AGCTGCTAGGCTGCTACAGTGACCAAGATTTCCTGGCCAAGCTGCATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513-21-17,21-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.5=100)
A:
NA
C2:
PF102654=DUF2217=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCTGGTGAAGGAG
R:
AATGCAGCTTGGCCAGGAAAT
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]