MmuALTA1016032-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30377479-30378025:+
Coord C1 exon
chr2:30377479-30377594
Coord A exon
chr2:30377971-30377975
Coord C2 exon
chr2:30377976-30378025
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTCTGTCCCTCTCCTCAGGAC
3' ss Score
13.41
Exon sequences
Seq C1 exon
ATCTTTGAGTCCCTGCAGATCGGCGAGTACCCGCTTCCTCTCTCCAGGCCTGCTGCTGCCTACGAGGAGGCTCTGCAGCTGGTGAAGGAAGGAAGAGTCCCTTGCCGAACACTCAG
Seq A exon
GACAG
Seq C2 exon
AGCTGCTGGGCTGCTACAGTGACCAGGACTTCCTAGCCAAGCTGCATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-20-19,20-18,20-17-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.4=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCTGGTGAAGGAAG
R:
ATGCAGCTTGGCTAGGAAGTC
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types