GgaALTA1013134-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5467400-5468022:+
Coord C1 exon
chr17:5467400-5467515
Coord A exon
chr17:5467950-5467954
Coord C2 exon
chr17:5467955-5468022
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
TCATTGCCTTTTCCCTCTAGGAC
3' ss Score
12.09
Exon sequences
Seq C1 exon
CTCTTTGACTCTCTTCACTTTGAGGAAATACCATACCACCTATCAAGGCCGGTAGCAGCATATGAAGAAGCCCTGCAGTTAGTGAAAGAAGGGAAGGTTGCATGCCGGACGTTGAG
Seq A exon
GACAG
Seq C2 exon
AGCTCCTTGGCTGCTATAGTGACCAGGATTTCCTTGCAAAGCTGCACTGTGTCAGGCAGGCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490-14-15,14-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGTAGCAGCATATGAAG
R:
TCCTGGTCACTATAGCAGCCA
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]