HsaALTA0003211-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131823510-131825595:+
Coord C1 exon
chr9:131823510-131823625
Coord A exon
NA
Coord C2 exon
chr9:131825523-131825595
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCGTCTGTCCTCCCCTCAGGAC
3' ss Score
11.93
Exon sequences
Seq C1 exon
CTCTTTGAGTCCCTGCAGACTGGAGATTACCCGATCCCACTCTCCAGACCCGCCGCTGCCTATGAGGAGGCCCTGCAGCTGGTGAAGGAGGGGAGAGTGCCTTGCCGGACCCTCAG
Seq A exon
NA
Seq C2 exon
GACGGAGCTGCTGGGCTGCTACAGTGACCAGGACTTTCTGGCCAAGCTGCACTGTGTGCGGCAGGCCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-21-27,21-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(12.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCTGCAGACTGGAGATT
R:
CACACAGTGCAGCTTGGCC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)