BtaALTA0011844-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20790550-20812841:-
Coord C1 exon
chr24:20812600-20812841
Coord A exon
chr24:20790880-20790882
Coord C2 exon
chr24:20790550-20790879
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CCTCTCCGCTGCTGCCGAAGCAG
3' ss Score
0.73
Exon sequences
Seq C1 exon
GTGGCGCTCCGGCTGGAGGATGGGGATGAGACGGCAGAGCCGCCCCCCAGCGGGTGCCGTGACCGCAGGCGGGCCAGTGTGTGCTCCGGAGGCACGGGCAGTGAGCCCCGGGGCCTGGACCGAAGGCGGAGCCGCAGGCACTCGGTGCAGAACATCAAGAGCCCCCTGTCGCCCCCGTCCAGCCCCTGCTCCCTGTCGGCTCCTGACTTCAAGCCCAGTCAAGTGCGAGATCTCCGGGAAAA
Seq A exon
CAG
Seq C2 exon
CGAGGCCCGCCTTGCCTCGGAGGTCGCCGCCACCGCCACCGAAAAGGATGCAGCCCCCGCCGCTGCCTCGCCGGGGAAGCCGCTGGCGGCCAGTGCTGAGGCGGGGACCTCCTCGGGCAGAGGGTCCTCGGGGCCCGCCCTGCGGCCGCCCCCCAGCCCCACCCCGGCCTCTTGGCCGTCCTCCAGTGCGCCTGCGCCCCCGAAGGCGTCACCCAGCAGAGAAAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAGGATTCGCCTTTGTCCACCAAGGAGAAGGAAGCCGAGTCCCAGCAGGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-18-20,18-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000061003fB2789
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACTTCAAGCCCAGTCA
R:
CATCCTTTTCGGTGGCGGTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development