BtaEX0014642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20784954-20812841:-
Coord C1 exon
chr24:20812600-20812841
Coord A exon
chr24:20793859-20793954
Coord C2 exon
chr24:20784954-20785067
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGGCCTTGTCTCAGGGT
3' ss Score
8.08
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GTGGCGCTCCGGCTGGAGGATGGGGATGAGACGGCAGAGCCGCCCCCCAGCGGGTGCCGTGACCGCAGGCGGGCCAGTGTGTGCTCCGGAGGCACGGGCAGTGAGCCCCGGGGCCTGGACCGAAGGCGGAGCCGCAGGCACTCGGTGCAGAACATCAAGAGCCCCCTGTCGCCCCCGTCCAGCCCCTGCTCCCTGTCGGCTCCTGACTTCAAGCCCAGTCAAGTGCGAGATCTCCGGGAAAA
Seq A exon
GGTTGAGGAGGAGGAGGAGGAGGAGGAGCAGCCAGTCACGGAGCCCAATTCAGAGGAAGAGAGAGAGGACGATGCCCCCTGTCAGGGCAAGGACAG
Seq C2 exon
ATACAGCAGCTTTGGCAACAACTCTCATCACTCCTCGAGACCTTCACCTGGATCCAGTGTGCCCACCACCCCCACGTCATCCGTCTCACCCCCACAGGAGGCCAGGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061003fB2788
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGCAGAACATCAAGAGC
R:
GTGGTGGGCACACTGGATC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development