DreEX0032814 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18865706-18880954:-
Coord C1 exon
chr16:18880713-18880954
Coord A exon
chr16:18868814-18868861
Coord C2 exon
chr16:18865706-18865822
Length
48 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTCTCTTCTGTGCAGTTT
3' ss Score
8.65
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAACTCTTCGTCATGAAGACGGTGATGATGAAGCTCAGTCTCCTCCATCTGGACATAAATGTCGGCGTCGGGCTAGTGTTGGAGCAACACCTGAGAGACGGGGTTTGGAACGACGGCGTAGCCGAAGACATTCACTCCAGAACGGAAAAGGCCACACTTCTGCTCCAACTTCCCCCTGTCACAGCCATACACCCAACATCCTGTCCTTTAACAGCCAGAGGATAGAAGACATCAGTGAAAG
Seq A exon
TTTGTCAGATGTTAGTTACCCAAACACACCATGCAGTTCTTGTGGCAG
Seq C2 exon
CAATGGCAATGCAAGCACATATCCCGGCAGGTCATCTGGGGTGTCCAGTGCCCTCTCCACACCCTACAACCGCTTCGGTCCTTCAGGAGGTCCATCTGCAGACAGTAAAGCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.941 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000088818fB2770
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAAAGGCCACACTTCTG
R:
AGATGACCTGCCGGGATATGT
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]