DreEX0032813 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18865706-18880954:-
Coord C1 exon
chr16:18880713-18880954
Coord A exon
chr16:18874361-18874765
Coord C2 exon
chr16:18865706-18865822
Length
405 bp
Sequences
Splice sites
3' ss Seq
TGTTATTCTGTCATTTGTAGCTG
3' ss Score
9.89
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCAACTCTTCGTCATGAAGACGGTGATGATGAAGCTCAGTCTCCTCCATCTGGACATAAATGTCGGCGTCGGGCTAGTGTTGGAGCAACACCTGAGAGACGGGGTTTGGAACGACGGCGTAGCCGAAGACATTCACTCCAGAACGGAAAAGGCCACACTTCTGCTCCAACTTCCCCCTGTCACAGCCATACACCCAACATCCTGTCCTTTAACAGCCAGAGGATAGAAGACATCAGTGAAAG
Seq A exon
CTGTGTGGCATCAACAGTAGAGGACGCTTCTAGCTTGTGTTTGCCTTTAAGGTGCATGGTCAACTTCATTCCAAATGCTGCTGACACAGAAAATGCAGAAAAACCTCGGAACAGGTCTGGGATCAGGGTTATCCACAAGGCCCCAATGTCCTCTCCTCCTTTTACCCCCGATTTTGTCCCCCCGTTATCACCCAGACTGTCTTCTTGGTCTTCAGTCAGATCTTTAGGAGCCGTCCCATCCCAGGGTTCCTCTGTCACCTCCTCAGCCTCCACTTCCCCGGGCGAAGAGCCCCAATCCCCTGTCCTCCCTCTTCTCTCTTCCAACCTTCTTCATACTTGCCCAGAGGATTTGGACGAGGTGTTTGTAGGCACTCTACAGGGTCAAGATCCAGACAAACACTGCAG
Seq C2 exon
CAATGGCAATGCAAGCACATATCCCGGCAGGTCATCTGGGGTGTCCAGTGCCCTCTCCACACCCTACAACCGCTTCGGTCCTTCAGGAGGTCCATCTGCAGACAGTAAAGCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.654 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000088818fB2769
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGTGATGATGAAGCTCA
R:
CTGTCGGCTTTACTGTCTGCA
Band lengths:
342-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]