HsaEX0025786 @ hg38
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr18:36625511-36658188:+
Coord C1 exon
chr18:36625511-36625749
Coord A exon
chr18:36652570-36652929
Coord C2 exon
chr18:36658075-36658188
Length
360 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCTGGCCCAACAGCAA
3' ss Score
7.04
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTGGCGCTCAGGCACGAGGATGGCGATGAGACCACGGAGCCACCCCCCAGTGGGTGCCGGGACCGGAGGAGGGCCAGCGTGTGTTCCAGTGGCGGAGGCGAGCACCGGGGCCTGGACCGCAGAAGGAGCCGCAGGCACTCGGTGCAGAGCATCAAGAGCACCCTGTCGGCCCCCACCAGTCCCTGCTCCCAGTCAGCTCCCAGCTTCAAGCCCAACCAAGTGCGAGATCTGCGTGAAAA
Seq A exon
CAAGGTCGGCGCTGCCTCAGGGCAGAGCCCCACTGGAAGGGATGCTGCTCCCAAGAGCTCTGCCCTCCCTGCTGTCTCGAATGCCAGCTCGCAGGGAAAGCCGCTTCTGGTTGGCACTGCAGGCGGGACCACCTGGCACAGTGGGTCCTCTGGGTCTGAGGCCACCCCATCTGCCCTCCTGTCACCCCCTGCCTCAGCTGCTCGGCCCTCCTCCGCCACACCAGGCTCCCTGAAGGTGTCACCGACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAGGACTCCTCCCTGTCCACCAAGGAGAAGGAAGCAGAGTCCCAGAAGGAAAACAG
Seq C2 exon
ATACAGCAATTTTGGCAATAACTCTTATCACTCCTCAAGACCCTCATCTGGATCCAGTGTGCCCACCACCCCCACATCATCCGTCTCACCCCCACAGGAGGCCAGGTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_MULTIEX2-2/18=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.953 A=0.841 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGGATGGCGATGAG
R:
CTTTCCAACCTGGCCTCCTGT
Band lengths:
342-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development