MmuEX0019238 @ mm10
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25001791-25028169:+
Coord C1 exon
chr18:25001791-25002032
Coord A exon
chr18:25022622-25022978
Coord C2 exon
chr18:25028065-25028169
Length
357 bp
Sequences
Splice sites
3' ss Seq
CGGCCTTCCTGGCCCAACAGCAA
3' ss Score
6.69
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGGCACTCAGGCATGAAGATGGTGATGAGACAGCTGAGCCACCCCCCAGTGGGCACCGGGACCGGAGGAGGGCCAGCATGTGTTCTGGTGGCACTGTGGGTGAGCAACAGGGCCTTGACCGCAGAAGGAGCCGTAGACACTCAATCCAGAATATCAAGAGCCCACTGTCAGCTCCCACCAGCCCCTGCTCCCCGTCTGTTCCTGCCTTCAAACCCAGCCAAGTTCGAGACCTCTGTGAAAA
Seq A exon
CAAGGCCAGCTCTGCCTCCGGTCAGAGCTCCCCTGGGAAGGATGCTGCTCCTGAGAGTTCTGCACTCCATACCACCTCAAGTCCCACCTCACAGGGAAGGTGGCTTTCTGCCAGCACAGCAGCACGGAGCCCTGTGCTTGGTGGGACCTCTGGGCCTGAGGCCAGCCGGCCTGCTGCTCGCTTGCTACCTCCCAGCCCTGGCTTGGCCACTCGGCCCTCCACAGCACCAAAGGTGTCTCCAACCATAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAAGATTCACCCCTCCTCACCAAGGACAAGGGAGGAGACTCTCAGACAGAAAACAG
Seq C2 exon
ATACAGCAATTTCAGCAGCAACTCTTTCCAATCCTCCAGACCCTCTCCTGGACCTAGTGGGTCCCCATCTTATGCATCATCCTTCTCATCCCCACAGGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.963 A=0.892 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAGGCATGAAGATGGT
R:
TCCTGTGGGGATGAGAAGGAT
Band lengths:
338-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types